Publications
2026
Overcoming the widespread flaws in the annotation of vertebrate selenoprotein genes in public databases
Ticó M, Sullivan E, Guigó R, Mariotti M†
PLoS Computational Biology
https://doi.org/10.1371/journal.pcbi.1013885
2025
The Metazoan Selenoproteome
Ticó M, Mariotti M†
Annual Review of Animal Biosciences
https://doi.org/10.1146/annurev-animal-030424-072943
Translon: a single term for translated regions
Świrski MI†, Tierney JAS†, Albà MM, Andreev DE, Aspden JL, Atkins JF, Bassani-Sternberg M, Berry MJ, Biffo S, Boris-Lawrie K, Borodovsky M, Brierley I, Brook M, Brunet MA, Bujnicki JM, Caliskan N, Calviello L, Carvunis AR, Cate JHD, Cenik C, Chang KY, Chen Y, Chothani S, Choudhary JS, Clark PL, Clauwaert J, Cooley L, Dassi E, Dean K, Diaz JJ, Dieterich C, Dikstein R, Dinman JD, Dmitriev SE, Dontsova OA, Dunham CM, Eswarappa SM, Farabaugh PJ, Faridi P, Fierro-Monti I, Firth AE, Gatfield D, Gebauer F, Gelfand MS, Gray NK, Green R, Hill CH, Hou YM, Hübner N, Ignatova Z, Ivanov P, Iwasaki S, Johnson R, Jomaa A, Jovanovic M, Jungreis I, Kellis M, Kieft JS, Kochetov AV, Koonin EV, Korostelev AA, Kufel J, Kulakovskiy IV, Kurian L, Lafontaine DLJ, Larsson O, Loughran G, Lukeš J, Mariotti M, Martens-Uzunova ES, Martinez TF, Matsumoto A, McManus J, Medenbach J, Melnikov SV, Menschaert G, Merchante C, Mikl M, Miller WA, Mühlemann O, Namy O, Nedialkova DD, Nosek J, Orchard S, Ozretić P, Pertea M, Pervouchine DD, Romão L, Ron D, Roucou X, Rubtsova MP, Ruiz-Orera J, Saghatelian A, Salzberg SL, Seale LA, Seoighe C, Sergiev PV, Shah P, Shirokikh N, Slavoff SA, Sonenberg N, Stasevich TJ, Szczesny RJ, Tamm T, Tchórzewski M, Topisirovic I, Tremblay ML, Tuller T, Ulitsky I, Valášek LS, Van Damme P, Viero G, Vizcaíno JA, Vogel C, Wallace EWJ, Weissman JS, Westhof E, Whiffin N, Wilson DN, Xie Z, Yewdell JW, Yordanova MM, Yu CH, Yurchenko V, Zagrovic B, TRANSLACORE, Valen E†, Baranov PV†
Nature Methods
https://doi.org/10.1038/s41592-025-02810-3
Dietary selenium deficiency accelerates the onset of aging-related gut microbial changes in aged telomere-humanized mice, with Akkermansia muciniphila being the most prominent and alleviating selenium deficiency-induced type 2 diabetes
Huang YC, Lu HY, Zhang L, Olivier A, Wu TL, Hsu CY, LeGrand C, Zeng H, Curran S, Wang Q, Nannapaneni R, Zhang X, Ticó M, Mariotti M, Wu RTY, Combs GF Jr, Cheng WH†
Aging Cell
https://doi.org/10.1111/acel.70130
Guidelines for minimal reporting requirements, design and interpretation of experiments involving the use of eukaryotic dual gene expression reporters (MINDR)
Loughran G†, Andreev DE, Terenin IM, Namy O, Mikl M, Yordanova MM, McManus CJ, Firth AE, Atkins JF, Fraser CS, Ignatova Z, Iwasaki S, Kufel J, Larsson O, Leidel SA, Mankin AS, Mariotti M, Tanenbaum ME, Topisirovic I, Vázquez-Laslop N, Viero G, Caliskan N, Chen Y, Clark PL, Dinman JD, Farabaugh PJ, Gilbert WV, Ivanov P, Kieft JS, Mühlemann O, Sachs MS, Shatsky IN, Sonenberg N, Steckelberg AL, Willis AE, Woodside MT, Valášek LS†, Dmitriev SE†, Baranov PV†
Nature Structural & Molecular Biology
https://doi.org/10.1038/s41594-025-01492-x
Overcoming the widespread flaws in the annotation of vertebrate selenoprotein genes in public databases
Ticó M, Sullivan E, Guigó R, Mariotti M†
PLoS Computational Biology
https://doi.org/10.1371/journal.pcbi.1013885
2025
The Metazoan Selenoproteome
Ticó M, Mariotti M†
Annual Review of Animal Biosciences
https://doi.org/10.1146/annurev-animal-030424-072943
Translon: a single term for translated regions
Świrski MI†, Tierney JAS†, Albà MM, Andreev DE, Aspden JL, Atkins JF, Bassani-Sternberg M, Berry MJ, Biffo S, Boris-Lawrie K, Borodovsky M, Brierley I, Brook M, Brunet MA, Bujnicki JM, Caliskan N, Calviello L, Carvunis AR, Cate JHD, Cenik C, Chang KY, Chen Y, Chothani S, Choudhary JS, Clark PL, Clauwaert J, Cooley L, Dassi E, Dean K, Diaz JJ, Dieterich C, Dikstein R, Dinman JD, Dmitriev SE, Dontsova OA, Dunham CM, Eswarappa SM, Farabaugh PJ, Faridi P, Fierro-Monti I, Firth AE, Gatfield D, Gebauer F, Gelfand MS, Gray NK, Green R, Hill CH, Hou YM, Hübner N, Ignatova Z, Ivanov P, Iwasaki S, Johnson R, Jomaa A, Jovanovic M, Jungreis I, Kellis M, Kieft JS, Kochetov AV, Koonin EV, Korostelev AA, Kufel J, Kulakovskiy IV, Kurian L, Lafontaine DLJ, Larsson O, Loughran G, Lukeš J, Mariotti M, Martens-Uzunova ES, Martinez TF, Matsumoto A, McManus J, Medenbach J, Melnikov SV, Menschaert G, Merchante C, Mikl M, Miller WA, Mühlemann O, Namy O, Nedialkova DD, Nosek J, Orchard S, Ozretić P, Pertea M, Pervouchine DD, Romão L, Ron D, Roucou X, Rubtsova MP, Ruiz-Orera J, Saghatelian A, Salzberg SL, Seale LA, Seoighe C, Sergiev PV, Shah P, Shirokikh N, Slavoff SA, Sonenberg N, Stasevich TJ, Szczesny RJ, Tamm T, Tchórzewski M, Topisirovic I, Tremblay ML, Tuller T, Ulitsky I, Valášek LS, Van Damme P, Viero G, Vizcaíno JA, Vogel C, Wallace EWJ, Weissman JS, Westhof E, Whiffin N, Wilson DN, Xie Z, Yewdell JW, Yordanova MM, Yu CH, Yurchenko V, Zagrovic B, TRANSLACORE, Valen E†, Baranov PV†
Nature Methods
https://doi.org/10.1038/s41592-025-02810-3
Dietary selenium deficiency accelerates the onset of aging-related gut microbial changes in aged telomere-humanized mice, with Akkermansia muciniphila being the most prominent and alleviating selenium deficiency-induced type 2 diabetes
Huang YC, Lu HY, Zhang L, Olivier A, Wu TL, Hsu CY, LeGrand C, Zeng H, Curran S, Wang Q, Nannapaneni R, Zhang X, Ticó M, Mariotti M, Wu RTY, Combs GF Jr, Cheng WH†
Aging Cell
https://doi.org/10.1111/acel.70130
Guidelines for minimal reporting requirements, design and interpretation of experiments involving the use of eukaryotic dual gene expression reporters (MINDR)
Loughran G†, Andreev DE, Terenin IM, Namy O, Mikl M, Yordanova MM, McManus CJ, Firth AE, Atkins JF, Fraser CS, Ignatova Z, Iwasaki S, Kufel J, Larsson O, Leidel SA, Mankin AS, Mariotti M, Tanenbaum ME, Topisirovic I, Vázquez-Laslop N, Viero G, Caliskan N, Chen Y, Clark PL, Dinman JD, Farabaugh PJ, Gilbert WV, Ivanov P, Kieft JS, Mühlemann O, Sachs MS, Shatsky IN, Sonenberg N, Steckelberg AL, Willis AE, Woodside MT, Valášek LS†, Dmitriev SE†, Baranov PV†
Nature Structural & Molecular Biology
https://doi.org/10.1038/s41594-025-01492-x
